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Pumpkin Cream Cheese Muffins combine a warm, spiced muffin with a rich pumpkin flavor, perfectly balanced by a swirl of tangy cream cheese. It’s topped with a cinnamon streusel for a nice crunch to combine all of the best parts of fall in one cozy, delicious treat. These pumpkin cream cheese muffins are just the right mix of sweet and creamy, and they pair perfectly with a cup of coffee on a crisp morning.

For more pumpkin recipes, try my starbucks pumpkin bread, moist pumpkin muffins and pumpkin bread with cream cheese frosting!

pumpkin cream cheese muffins on a wooden table with little pumpkins.

Gaaahh these pumpkin cream cheese muffins are my first pumpkin recipe of the Fall season and I am SO pumped about it! They’re loaded with homemade pumpkin pie spice flavor, a soft cream cheese center on top with a sprinkle of buttery cinnamon streusel.

These muffins are my love language and I’m completely unapologetic about it! 

They’re the perfect Fall breakfast to go with your pumpkin cream cold brew! And don’t even get me started because they’re so much better than the starbucks pumpkin cream cheese muffins.

Just like me starbucks copycat lemon loaf, they’re similar in appearance, but have more flavor, better texture, and they’re homemade = more delicious!! Not to mention, there’s a cinnamon streusel topping as opposed to pumpkin seeds – it gets no better than this. Besides, who needs to make a store run when you can make your own homemade cream cheese-stuffed pumpkin muffins right at home? 

Between the moist crumb, perfectly warm spiced flavor, cheesecake filling – you need to bake these immediately

Key Ingredients 

pumpkin cream cheese muffins on a wire rack in front of a jar and a pumpkin mug.

(full list of ingredients in the recipe card)

Pumpkin Puree – we’re using a whole can of pumpkin puree (do not use pumpkin pie filling, it’s NOT the same thing!!) so there’s no waste! Also, no need to blot the puree, we’re keeping it as is so that we get all of the moisture into these makings – 

Full-fat cream cheese – the cream cheese dollops take these from regular pumpkin muffins to the BEST pumpkin muffins! It’s like having creamy cheesecake in the center! Use full fat cream cheese here, this is no time for low fat! 

Spices – you’ll need cinnamon, ground ginger, cardamom, nutmeg, and cloves. These are what gives the cream cheese pumpkin muffin it’s warm and cozy flavor. 

Eggs and Egg Yolk – the eggs are for the muffin batter while the egg yolk is for the cream cheese filling. The whole egg functions as a binder in the pumpkin muffin batter to provide structure. The egg yolk adds creamy richness to the cream cheese mixture and allows it to sit atop the muffin as opposed sinking to the bottom while baking. 

Vegetable Oil and Sour Cream – these ingredients bring on the moisture! Sour cream adds a hint of tang that complements the warm spices while vegetable oil is what keeps these muffins moist for days.

Vanilla Extract – just a smidge of vanilla extract brings all of the warm spices and pumpkin flavor together. 

How to make Pumpkin Cream Cheese Muffins 

Make the Cinnamon Streusel and Cream Cheese Layer

cinnamon streusel in a glass mixing bowl.

Step 1: In a medium mixing bowl, combine brown sugar, all purpose flour, and cinnamon. Whisk together and add the melted butter. Mix until crumbles form and place into the freezer. 

cream cheese filling whisked together in a bowl.

Step 2: Add room temperature cream cheese to a large bowl. Using an electric hand mixer, mix on medium speed for about 20-30 seconds, until smooth and fluffy. Then add powdered sugar, vanilla extract, egg yolk, and a pinch of salt. Continue to mix until smooth and combined, about 1 minute. Set aside.

Prepare the Muffin Batter 

flour, spices, baking powder, and baking soda whisked together in a bowl.

Step 3: Preheat oven to 425 degrees F. In a large mixing bowl, combine flour, baking soda, baking powder, salt, cinnamon, nutmeg, ginger, allspice, and cardamom. Whisk together and set aside.

pumpkin puree, eggs, brown sugar, sugar, vegetable oil, sour cream,  and vanilla extract whisked together in a bowl.

Step 4: In a separate bowl, whisk together brown sugar, sugar, vegetable oil, and sour cream. Whisk until smooth, then add eggs and vanilla extract, and canned pumpkin puree. Continue to whisk together until smooth and all ingredients are fully incorporated.

Assemble and Bake 

pumpkin muffin batter in a bowl.

Step 5: Add the dry ingredients to the wet ingredients and whisk until just combined and there are no patches of flour, about 20 seconds. Do not overmix.

pumpkin cream cheese muffins in a muffin pan with cream cheese filling topped with cinnamon streusel.

Step 6: Line two muffin pans with muffin/cupcake liners in every other muffin cup. Pour batter to the top of each lined muffin cup (about ¼ cup of batter). Dollop 1 tbsp of the cream cheese mixture on top of the muffin, then add the cinnamon streusel on top of the cream cheese. Pour 3 tbsp of water into the empty muffin cups.Bake one pan at a time for 5 minutes at 425 degrees. Then reduce the heat to 350 degrees and baking for 14-17 minutes, until a toothpick comes out clean. 

Expert Muffin Making Tips

  • MAJOR MUFFIN TIP RANT (super important though!): We’re baking 6 muffins at a time using a 12-cup muffin pan. That means there’s 6 empty muffin cups. There’s a small trick here – add about 3 tbsp of water to the empty muffin cups. This creates steam while the muffins are baking in the oven and keeps your muffins nice and moist. It also prevents your pan from warping. It’s a win win all around. 
  • Don’t Overmix the Batter: Mix the wet and dry ingredients until just combined to avoid tough muffins. Overmixing can lead to dense, chewy muffins instead of soft and fluffy ones.
  • Check for Doneness with a Toothpick: Insert a toothpick into the center of a muffin; if it comes out clean or with just a few crumbs, they’re done. This helps prevent overbaking, which can dry out the muffins.
  • Let Them Cool Properly: Allow the muffins to cool in the pan for about 10 minutes before transferring them to a wire rack. This prevents them from becoming soggy and helps them keep their shape.
up close photo of pumpkin cream cheese muffins on a wire rack.

Recipe FAQs

Can you freeze pumpkin cream cheese muffins? 

Yes, you can freeze pumpkin cream cheese muffins! Make sure they are completely cooled, then wrap each muffin individually in plastic wrap or foil to prevent freezer burn. Store them in an airtight container or freezer bag, and they’ll stay fresh for up to three months—just thaw at room temperature or warm them up in the microwave when you’re ready to enjoy them.

How to store pumpkin cream cheese muffins?

To store pumpkin cream cheese muffins, first make sure they are completely cooled. Place them in an airtight container and keep them in the refrigerator for up to five days to maintain freshness and prevent the cream cheese from spoiling. If you want to enjoy them warm, simply pop them in the microwave for a few seconds before eating.

Do pumpkin cream cheese muffins need to be refrigerated? 

Yes, pumpkin cream cheese muffins should be refrigerated because the cream cheese filling can spoil if left at room temperature for too long. Store them in an airtight container in the fridge to keep them fresh for up to five days.

More Muffin Recipes

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Pumpkin Cream Cheese Muffins

Prep: 25 minutes
Cook: 22 minutes
Total: 47 minutes
Servings: 14 muffins
Pumpkin Cream Cheese Muffins combine a warm, spiced muffin with a rich pumpkin flavor, perfectly balanced by a swirl of tangy cream cheese.

Equipment

Save this recipe!
Get this sent to your inbox, plus get new recipes from us every week!

Ingredients 

Cinnamon Streusel Topping

  • 1/3 cup + 1 tbsp (86 g) Brown Sugar
  • 3/4 cup (94 g) All Purpose Flour
  • 2 tsp Cinnamon
  • 4 tbsp Salted Butter, (melted)

Cream Cheese Filling

  • 8 oz (227 g) Cream Cheese, (room temperature)
  • 1/4 cup (30 g) Powdered Sugar
  • 1 Egg Yolk
  • 1 tsp Vanilla Extract
  • Pinch Kosher Salt

Pumpkin Muffins

  • 2 cups (250 g) All Purpose Flour
  • 1 1/4 tsp (1.25 tsp) Baking Soda
  • 1 tsp Baking Powder
  • 1/2 tsp (0.5 tsp) Kosher Salt
  • 2 tsp Cinnamon
  • 1/2 tsp (0.5 tsp) Allspice
  • 1/4 tsp (0.25 tsp) Nutmeg
  • 1/4 tsp (0.25 tsp) Ginger
  • 1/4 tsp (0.25 tsp) Cardamom
  • 1 cup (220 g) Brown Sugar
  • 1/2 cup (100 g) Sugar
  • 1/3 cup (80 ml) Vegetable Oil
  • 1/4 cup (60 g) Sour Cream
  • 2 large Eggs
  • 2 tsp (2 tsp) Vanilla Extract
  • 15 oz (425 g) Pumpkin Puree

Instructions 

  • Preheat oven to 425 degrees F.
  • In a medium mixing bowl, combine brown sugar, all purpose flour, and cinnamon. Whisk together and add the melted butter. Mix until crumbles form and place into the freezer. 
  • Add room temperature cream cheese to a large bowl. Using an electric hand mixer, mix on medium speed for about 20-30 seconds, until smooth and fluffy. Then add powdered sugar, vanilla extract, egg yolk, and a pinch of salt. Continue to mix until smooth and combined, about 1 minute. Set aside.
  • In a large mixing bowl, combine flour, baking soda, baking powder, salt, cinnamon, nutmeg, ginger, allspice, and cardamom. Whisk together and set aside.
  • In a separate bowl, whisk together brown sugar, sugar, vegetable oil, and sour cream. Whisk until smooth, then add eggs and vanilla extract, and canned pumpkin puree. Continue to whisk together until smooth and all ingredients are fully incorporated.
  • Add the dry ingredients to the wet ingredients and whisk until just combined and there are no patches of flour, about 20 seconds. Do not overmix.
  • Line two muffin pans with muffin/cupcake liners in every other muffin cup. Pour batter to the top of each lined muffin cup (about ¼ cup of batter). Dollop 1 tbsp of the cream cheese mixture on top of the muffin, then add the cinnamon streusel on top of the cream cheese. 
  • Pour 3 tbsp of water into the empty muffin cups.
  • Bake one pan at a time for 5 minutes at 425 degrees. Then reduce the heat to 350 degrees and baking for 14-17 minutes, until a toothpick inserted into the center of the muffin comes out clean. 

Notes

  • We’re baking 6 muffins at a time using a 12-cup muffin pan. That means there’s 6 empty muffin cups. There’s a small trick here – add about 3 tbsp of water to the empty muffin cups. This creates steam while the muffins are baking in the oven and keeps your muffins nice and moist. It also prevents your pan from warping. It’s a win win all around. 
  • Don’t Overmix the Batter: Mix the wet and dry ingredients until just combined to avoid tough muffins. Overmixing can lead to dense, chewy muffins instead of soft and fluffy ones.
  • Check for Doneness with a Toothpick: Insert a toothpick into the center of a muffin; if it comes out clean or with just a few crumbs, they’re done. This helps prevent overbaking, which can dry out the muffins.
  • Let Them Cool Properly: Allow the muffins to cool in the pan for about 10 minutes before transferring them to a wire rack. This prevents them from becoming soggy and helps them keep their shape.

Nutrition

Serving: 1muffin, Calories: 379kcal, Carbohydrates: 54g, Protein: 5g, Fat: 16g, Saturated Fat: 7g, Polyunsaturated Fat: 4g, Monounsaturated Fat: 4g, Trans Fat: 0.2g, Cholesterol: 68mg, Sodium: 308mg, Potassium: 163mg, Fiber: 2g, Sugar: 33g, Vitamin A: 5130IU, Vitamin C: 1mg, Calcium: 80mg, Iron: 2mg

Nutrition information is automatically calculated, so should only be used as an approximation.

Tried this recipe?Mention @BritneyBreaksBread or tag #BritneyBreaksBread!

About Britney Chamberlain

Hello friends and welcome to my little (but delicious) corner of the internet! I'm Britney, the heart and soul behind Britney Breaks Bread. I'm a mom, wife, and lover of delicious wholesome food!

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